Imagine someone who wrestles pigs or alligators or pythons for a living, having to pin them down in the mud of their habitat. That's literally "down in the mud", where the worker gets all dirty doing their work.
Imagine someone who has to deal with criminals, as a bounty hunter must. He probably gets dirty in another sense. That's figuratively "down in the mud".
Now for contrast, imagine a quiet office, where people come in to work in the morning, work peacefully all day, and go home at night having spent a day with no bad things happening. That's not "down in the mud".